Publications

Selection of publications created by users and staff of Czech-BioImaging

  • Honěk J, Šrámek M, Honěk T, Tomek A, Šefc L, Januška J, Fiedler J, Horváth M, Novotný Š and Veselka J. Patent Foramen Ovale Closure Is Effective in Divers Long-Term Results From the DIVE-PFO Registry. Journal of the American College of Cardiology. 2020, 76(9), 1149-1150. ISSN 0735-1097.
    DOI: 10.1016/j.jacc.2020.06.072
    IF 20,59

  • Eva Janisiw, Marilina Raices, Fabiola Balmir, Luis F. Paulin, Antoine Baudrimont, Arndt von Haeseler, Judith L. Yanowitz, Verena Jantsch & Nicola Silva. Poly(ADP‐ribose) glycohydrolase coordinates meiotic DNA double‐strand break induction and repair independent of its catalytic activity. Nature Commun. 2020 (11) 4869.
    DOI: 10.1038/s41467-020-18693-1
    IF 13,60

  • Tan S, Zhang X, Kong W, Yang XL, Molnár G, Vondráková Z, et al. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nat. Plants.
    DOI: 10.1038/s41477-020-0648-9
    IF 13,25

  • Broft P, Dzatko S, Krafcikova M, Wacker A, Hänsel‐Hertsch R, Dötsch V, Trantirek L & Schwalbe H. (2020). In‐Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells. Angew. Chem. Int. Ed., 59, 2-11.
    DOI: 10.1002/anie.202007184
    IF 12,96

  • Hanzlikova H, Prokhorova E, Krejcikova K, Cihlarova Z, Kalasova I, Kubovciak J, Sachova J, Hailstone R, Brazina J, Ghosh S, Cirak S, Gleeson JG, AhelI and Caldecott KW (2020). "Pathogenic ARH3 mutations result in ADP-ribose chromatin scars during DNA strand break repair." Nature Communications 11(1).
    DOI: 10.1038/s41467-020-17069-9
    IF 12,12

  • Henrichs V, Grycova L, Barinka C, et al. Mitochondria‐adaptor TRAK1 promotes kinesin‐1 driven transport in crowded environments. Nat Commun. 2020;11(1):3123.
    DOI: 10.1038/s41467-020-16972-5
    IF 12,12

  • Krivanek J, Soldatov RA, Kastriti ME, Chontorotzea T, Herdina AN, Petersen J, Szarowska B, Landova M, Kovar Matejova V, Izakovicova Holla L, Kuchler U, Vidovic Zdrilic I, Vijaykumar A, Balic A, Marangoni P, Klein OD, Neves VCM, Yianni V, Sharpe PT, Harkany T, Metscher BD, Bajénoff M, Mina M, Fried K, Kharchenko, PV, & Adameyko I. (2020). Dental cell type atlas reveals stem and differentiated cell types in mouse and human teeth. Nature communications, 11, 4816, 1-18.
    DOI: 10.1038/s41467-020-18512-7
    IF 12,12

  • Pospisil J, Vitovska D, Kofronova O, Muchova K, Sanderova H, Hubalek M, Sikova M, Modrak M, Benada O, Barak I and Krasny L (2020). "Bacterial nanotubes as a manifestation of cell death." Nat Commun 11(1): 4963.
    DOI: 10.1038/s41467-020-18800-2
    IF 12,12

  • Venit T, Semesta K, Farrukh S, Endara-Coll M, Havalda R, Hozak P and Percipalle P (2020). "Nuclear myosin 1 activates p21 gene transcription in response to DNA damage through a chromatin-based mechanism." Communications Biology 3(1).
    DOI: 10.1038/s42003-020-0836-1
    IF 12,12

  • Ganesh S, Horvat F, Drutovic D, Efenberkova M, Pinkas D, Jindrova A, Pasulka J, Iyyappan R, Malik R, Susor A, Vlahovicek K, Solc P and Svoboda P (2020). "The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution." Nucleic Acids Research 48(6): 3211-3227.
    DOI: 10.1093/nar/gkz1239
    IF 11,50
  • Mouawad L, Lansky Z, Hamel V, Guichard P. Flagellar microtubule doublet assembly in vitro reveals a regulatory role of tubulin C-terminal tails. Science. 2019; 363(6424): 285–288.
    DOI: 10.1126/science.aav2567
    IF 41,06

  • Schmidt-Cernohorska M, Zhernov I, Steib E, Le Guennec M, Achek R, Borgers S, Demurtas D, Mouawad L, Lansky Z, Hamel V, Guichard P. Flagellar microtubule doublet assembly in vitro reveals a regulatory role of tubulin C-terminal tails. Science. 363(6424), 285–288 (2019).
    DOI: 10.1126/science.aav2567
    IF 41,06

  • Siahaan V, Krattenmacher J, Hyman AA, Diez S, Hernández-Vega A, Lansky Z, Braun M. Kinetically distinct phases of tau on microtubules regulate kinesin motors and severing enzymes. Nature Cell Biology (9):1086-1092 (2019).
    DOI: 10.1038/s41556-019-0374-6
    IF 17,73

  • Kotrbová A, Štěpka K, Maška M, Pálenik J, Ilkovics L, Klemová D, Kravec M, Hubatka F, Dave Z, Hampl A, Bryja V, Matula P, Pospíchalová V. TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images. Journal of Extracellular Vesicles, 2019, 8(1):1-13. ISSN 2001-3078.
    DOI: 10.1080/20013078.2018.1560808
    IF 14,98

  • Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Hampl V. The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion. Mol. Biol. Evol. (2019). 36(10):2292-2312.
    DOI: 10.1093/molbev/msz147
    IF 14,80

  • Krafčíková M, Džatko Š, CaronC, Granzhan A, Fiala R, Loja T, Teulade-Fichou MP, Fessl T, Hansel-Hertsch R, Mergny JL, Foldynova-Trantirkova S, Trantírek L. Monitoring DNA-Ligand Interactions in Living Human Cells Using NMR Spectroscopy. Journal of the American Chemical Society, 2019, 141(34), 13281-13285.
    DOI: 10.1021/jacs.9b03031
    IF 14,70

  • Kaiser K, Gyllborg D, Prochazka J, Salašová A, Kompaníková P, Molina FL, Laguna-Goya R, Radaszkiewicz TW, Harnoš J, Prochazkova M, Potěšil D, Barker RA, Casado AG, Zdráhal Z, Sedlacek R, Arenas E, Villaescusa JC a Bryja V. WNT5A is transported via lipoprotein particles in the cerebrospinal fluid to regulate hindbrain morphogenesis. Nature Commun., 2019, 10(1), 1-15.
    DOI: 10.1038/s41467-019-09298-4
    IF 13,60

  • Bouchal, P.; Dvořák, P.; Babocký, J.; Bouchal Z.; Ligmajer, F.; Hrtoň M.; Křápek. V.; Faßbender, A.; Linden, S.; Chmelík, R.; Šikola, T, 2019: High-Resolution Quantitative Phase Imaging of Plasmonic Metasurfaces with Sensitivity down to a Single Nanoantenna. Nano Letters 19 (2),1242-1250.
    DOI: 10.1021/acs.nanolett.8b04776
    IF 11,24

  • Fajkus P, Peška V, Závodník M, Fojtová M, Fulnečková J, Dobias S, Kilar AM, Dvořáčková M, Zachová D, Nečasová I, Sims J, Sýkorová E, Fajkus J. Telomerase RNAs in land plants. Nucleic acids research, 2019, 47(18), 9842-9856.
    DOI: 10.1093/nar/gkz695
    IF 11,15

  • Jelínková, A., Malínská, K., and Petrášek, J. (2019). Using FM Dyes to Study Endomembranes and Their Dynamics in Plants and Cell Suspensions. In Plant Cell Morphogenesis. Methods Mol Biol. 1992:173–187.
    DOI: 10.1007/978-1-4939-9469-4_11
    IF 10,71
  • Bajzikova M, Kovarova J, Coelho AR, Boukalova S, Oh S, Rohlenova K, Svec D, Hubackova S, Endaya B, Judasova K, Bezawork-Geleta A, Kluckova K, Chatre L, Zobalova R, Novakova A, Vanova K, Ezrova Z, Maghzal GJ, Magalhaes Novais S, Olsinova M, Krobova L, An YJ, Davidova E, Nahacka Z, Sobol M, Cunha-Oliveira T, Sandoval-Acuna C, Strnad H, Zhang T, Huynh T, Serafim TL, Hozak P, Sardao VA, Koopman WJH, Ricchetti M, Oliveira PJ, Kolar F, Kubista M, Truksa J, Dvorakova-Hortova K, Pacak K, Gurlich R, Stocker R, Zhou Y, Berridge MV, Park S, Dong L, Rohlena J, Neuzil J. Reactivation of Dihydroorotate Dehydrogenase-Driven Pyrimidine Biosynthesis Restores Tumor Growth of Respiration-Deficient Cancer Cells. Cell Metab 2018; pii:S1550-4131(18)30646-6. [Epub ahead of print].
    DOI: 10.1016/j.cmet.2018.10.014
    IF 20,57

  • Jirouskova M, Nepomucka K, Oyman-Eyrilmez G, Kalendova A, Havelkova H, Sarnova L, Chalupsky K, Schuster B, Benada O, Miksatkova P, Kuchar M, Fabian O, Sedlacek R, Wiche G, Gregor M. Plectin controls biliary tree architecture and stability in cholestasis. J Hepatol. 2018; 68(5): 1006-1017.
    DOI: 10.1016/j.jhep.2017.12.011
    IF 15,04

  • Hanzlikova H, Kalasova I, Demin AA, Pennicott LE, Cihlarova Z, Caldecott KW. The Importance of Poly(ADP-Ribose) Polymerase as a Sensor of Unligated Okazaki Fragments during DNA Replication. Mol Cell 2018; 71(2): 319-331.e3.
    DOI: 10.1016/j.molcel.2018.06.004
    IF 14,25

  • Bezawork-Geleta A, Wen H, Dong L, Yan B, Vider J, Boukalova S, Krobova L, Vanova K, Zobalova R, Sobol M, Hozak P, Novais SM, Caisova V, Abaffy P, Naraine R, Pang Y, Zaw T, Zhang P, Sindelka R, Kubista M, Zuryn S, Molloy MP, Berridge MV, Pacak K, Rohlena J, Park S, Neuzil J. Alternative assembly of respiratory complex II connects energy stress to metabolic checkpoints. Nat Commun 2018; 9(1): 2221.
    DOI: 10.1038/s41467-018-04603-z
    IF 12,40

  • Dzatko S, Krafcikova M, Hänsel-Hertsch R, Fessl T, Fiala R, Loja T, Krafcik D, Mergny JL, Foldynova-Trantirkova S, Trantirek L. Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells. Angew Chem Int Ed Engl. 2018; 57(8): 2165-2169.
    DOI: 10.1002/anie.201712284
    IF 12,1

  • Kazamia E, Sutak R, Paz-Yepes J, Dorrell RG, Jimenez Vieira FR, Mach J, Morrissey J, Leon S, Lam F, Pelletier E, Camadro JM, Bowler C, Lesuisse E. Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms. Sci Adv 2018; 4(5): eaar4536 (2018).
    DOI: 10.1126/sciadv.aar4536
    IF 11,51

  • Magiera MM, Bodakuntla S, Ziak J, Lacomme S, Sousa PM, Leboucher S, Hausrat TJ, Bosc C, Andrieux A, Kneussel M, Landry M, Calas A, Balastik M, Janke C. Excessive tubulin polyglutamylation causes neurodegeneration and perturbs neuronal transport. EMBO Journal 37 (23): e100440, 2018.
    DOI: 10.15252/embj.2018100440
    IF 10,56

  • Kaurov I., Vancová M., Schimanski B., Cadena L.R., Heller J., Bílý T., Potěšil D., Eichenberger C., Bruce H., Oeljeklaus S., Warscheid B., Zdráhal Z., Schneider A, Lukeš J., H. Hashimi H., 2018: The Diverged Trypanosome MICOS Complex as a Hub for Mitochondrial Cristae Shaping and Protein Import. Current Biology 28: 3393-3407, e5
    DOI: 10.1016/j.cub.2018.09.008
    IF 9,97

  • Platre MP, Noack LC, Doumane M, Bayle V, Simon MLA, Maneta-Peyret L, Fouillen L, Stanislas T, Armengot L, Pejchar P, et al. (2018). A Combinatorial Lipid Code Shapes the Electrostatic Landscape of Plant Endomembranes. Developmental Cell 45: 465–480.e11.
    DOI: 10.1016/j.devcel.2018.04.011
    IF 9,62

  • Kania U, Nodzyński T, Lu Q, Hicks GR, Nerinckx W, Mishev K, Peurois F, Cherfils J, De Rycke R, Grones P, Robert S, Russinova E, Friml J. The Inhibitor Endosidin 4 Targets SEC7 Domain‐Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes. Plant Cell. 2018 Oct;30(10):2553‐2572.
    DOI: 10.1105/tpc.18.00127
    IF 8,63
  • Skrott, Z., Mistrik, M., Andersen, K. et al. Alcohol-abuse drug disulfiram targets cancer via p97 segregase adaptor NPL4. Nature 552, 194–199 (2017).
    DOI: 10.1038/nature25016
    IF 41,58

  • Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho S, Dufour AC, Olivo-Marin J, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. An objective comparison of cell-tracking algorithms. Nature Methods, 2017, vol. 14, No 12, p. 1141-1152. ISSN 1548-7091. 2017.
    DOI: 10.1038/nmeth.4473
    IF 26,92

  • Lukeš, T., Glatzová, D., Kvíčalová, Z. et al. Quantifying protein densities on cell membranes using super-resolution optical fluctuation imaging. Nat Commun 8, 1731 (2017).
    DOI: 10.1038/s41467-017-01857-x
    IF 12,35

  • Robert HS, Park C, Gutièrrez CL, Wójcikowska B, Pěnčík A, Novák O, Chen J, Grunewald W, Dresselhaus T, Friml J, Laux T. Maternal auxin supply contributes to early embryo patterning in Arabidopsis. Nat Plants. 2018; 4(8): 548-553.
    DOI: 10.1038/s41477-018-0204-z
    IF 11,47

  • Bacakova L, Zarubova J, Travnickova M, Musilkova J, Pajorova J, Slepicka P, Kasalkova NS, Svorcik V, Kolska Z, Motarjemi H, Molitor M. Stem cells: their source, potency and use in regenerative therapies with focus on adipose-derived stem cells - a review. Biotechnology Advances 2018; 36: 1111–1126.
    DOI: 10.1016/j.biotechadv.2018.03.011
    IF 11,45

  • Skalický T., Dobáková E., Wheeler R.J., Tesařová M., Flegontov P., Jirsová D., Votýpka J., Yurchenko V., Ayala F., Lukeš J. 2017: Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid. PNAS 114: 11757-11762.
    DOI: 10.1073/pnas.1712311114
    IF 10,36

  • Dachev, M., Bína, D., Sobotka, R., Moravcová, L., Gardian, Z., Kaftan, D., Šlouf, V., Fuciman, M., Polívka, T. & Koblížek, M. 2017: Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica. PLoS Biology 15(12): e2003943.
    DOI: 10.1371/journal.pbio.2003943
    IF 9,53

  • Petrlova et al. Aggregation of thrombin-derived C-terminal fragments as a previously undisclosed host defense mechanism. PNAS. 114:E4213-E4222.
    DOI: 10.1073/pnas.1619609114
    IF 9,50

  • Anderkova, L., Barton, M., & Rektorova, I. (2017). Striato-cortical connections in Parkinson’s and Alzheimer’s diseases: Relation to cognition. Movement Disorders.
    DOI: 10.1002/mds.26956
    IF 8,68

  • Dong LF, Kovarova J, Bajzikova M, Bezawork-Geleta A, Svec D, Endaya B, Sachaphibulkij K, Coelho AR, Sebkova N, Ruzickova A, Tan AS, Kluckova K, Judasova K, Zamecnikova K, Rychtarcikova Z, Gopalan V, Andera L, Sobol M, Yan B, Pattnaik B, Bhatraju N, Truksa J, Stopka P, Hozak P, Lam AK, Sedlacek R, Oliveira PJ, Kubista M, Agrawal A, Dvorakova-Hortova K, Rohlena J, Berridge MV, Neuzil J. Horizontal transfer of whole mitochondria restores tumorigenic potential in mitochondrial DNA-deficient cancer cells. Elife. 2017 Feb 15;6:e22187. PMID: 28195532; PMCID: PMC5367896.
    DOI: 10.7554/eLife.22187
    IF 7,73
  • Tucek J, Sofer Z, Bousa D, Pumera M, Hola K, Mala A, Polakova K, Havrdova M, Cepe K, Tomanec O, Zboril R. Air-stable superparamagnetic metal nanoparticles entrapped in graphene oxide matrix. Nature Communications, 2016; 7: 12879.
    DOI: 10.1038/ncomms12879
    IF 11,33

  • Chroma K, Mistrik M, Moudry P, Gursky J, Liptay M, Strauss R, Skrott Z, Vrtel R, Bartkova J, Kramara J, Bartek J. Oncogene. 2017 Apr 27;36(17):2405‐2422. Epub 2016 Nov 14. Tumors overexpressing RNF168 show altered DNA repair and responses to genotoxic treatments, genomic instability and resistance to proteotoxic stress
    DOI: 10.1038/onc.2016.392
    IF 6,85

  • Mistrik M., Vesela E., Furst T., Hanzlikova H., Frydrych I., Gursky J, Majera D. & Bartek J. A novel quantitative photo‐manipulation technique. Sci Rep. 2016 Jan 18;6:19567. Cells and Stripes.
    DOI: 10.1038/srep19567
    IF 4,12

  • Kratochvila, J; Jirik, R; Bartos, M; Standara, M; Starcuk, Z; Taxt, T: Distributed capillary adiabatic tissue homogeneity model in parametric multi‐channel blind AIF estimation using DCE‐MRI. Magnetic Resonance in Medicine 75 (2016), 1355‐1365.
    DOI: 10.1002/mrm.25619
    IF 3,92

  • Laňková M, Humpolíčková J, Vosolsobě S, Cit Z, Lacek J, Čovan M, Čovanová M, Hof M, Petrášek J. Determination of Dynamics of Plant Plasma Membrane Proteins with Fluorescence Recovery and Raster Image Correlation Spectroscopy. Microsc Microanal. 2016 Apr;22(2):290-9.
    DOI: 10.1017/S1431927616000568
    IF 2,12

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