11 – 13 November 2025
Institute of Molecular Genetics, Vídeňská 1083, 142 20, Prague
TBD
CANCELLED FOR 2025
Microscopy Service Unit of the IEM CAS / Bioimaging Facility of the IPHYS CAS / Core Facility – Magnetic Resonance of the ISI CAS
The course aims to teach multimodal preclinical imaging techniques, including in vivo two-photon microscopy, in vivo multi-photon-based label-free techniques (SHG, THG, CARS), and magnetic resonance imaging (MRI) of small rodents. Participants will acquire theoretical knowledge and practical skills in various neuroimaging techniques, with a focus on intravital multi-photon microscopy and MRI principles. Emphasizing the importance of animal models in physiological research, the course guides participants through the entire process of conducting preclinical bioimaging experiments. It includes a detailed pipeline for analyzing brain tumour structures and functional parameters, covering cranial window surgery, two-photon microscopy usage, perfusion MRI and subsequent image analysis. Additionally, the workshop addresses the challenges in using animal models for research and provides access to field experts.
Course fee: 11500 CZK incl. VAT (approx. 450 EUR)
Registration deadline: 30. 6. 2025
Registration is handled on a first-come, first-served basis, and places are limited to 10 participants. To secure a spot, payment must be completed upon receiving the invoice.
As part of the registration process, applicants are asked to describe their expectations for the course, the challenges they would like to address, and how the knowledge gained will benefit their research. The response should be 200-300 words long.
If the number of applicants exceeds the available spots before all registrations are confirmed, priority will be given based on the relevance of each applicant’s description of their expectations and how they plan to apply the knowledge gained.
Once registered, applicants will receive an invoice, and their place will be confirmed once payment is received.
The fee covers all course materials and teaching, meals throughout the course, refreshments during the opening and closing social events, transportation between Prague and Brno, and accommodation in Brno for the night from Thursday to Friday. It does not include travel costs to and from the course location (except for the provided transportation between Prague and Brno) or accommodation from Monday to Thursday.
12 – 14 November 2025
Institute of Experimental Medicine, Vídeňská 1083, 142 20, Prague
The course is tailored to users already familiar with the basics of image processing. It will be focused on automatization, high throughput and basic scripting. Course participants will learn how to create and edit macros in ImageJ and how to write more sophisticated scripts for batch processing. Furthermore, they will learn the basics of image processing in Matlab and Cellpose.
22 – 23 May 2025
Institute of Experimental Medicine, Vídeňská 1083, 142 20, Prague
This course is designed to introduce participants to the fundamentals of volumetric and time-lapse data processing. It covers various tools for processing, visualization, and quantitative analysis of 3D/4D microscopy data. The first part of the course will provide an introduction to Imaris software, while the second part will explore several other software options.
The course includes hands-on sessions, giving participants the opportunity to personally explore and use the tools. No prior knowledge of the software is required.
Dear Czech-BioImaging Users,
We are excited to announce the Czech-BioImaging Open Call for User Project Support for Spring 2025! This call invites innovative researchers to apply for financial support to carry out cutting-edge biomedical imaging projects at our Core Facilities.
Through this program, we provide up to CZK 100,000 (approximately €3,800) to support measurement costs, imaging-related sample preparation, and data analysis. We welcome both academic and commercial users from Czech and international institutions. This call aims to help users advance their projects by offering access to state-of-the-art technologies and expert support. Many past collaborations have led to impactful publications and successful grant applications.
Open Call Timeline:
How to Apply: Submit your project details through the online application form, providing a scientific and methodological overview, expected outcomes, and financial needs. After submission, a panel of experts will evaluate your project based on its originality, scientific excellence, and feasibility.
For more information on eligibility, the application process, and the types of support available, please visit: www.czech-bioimaging.cz/open-calls
Dear Czech-BioImaging Users,
we are excited to share with you the launch of the Falling Walls Global Call 2025, a key part of the renowned Falling Walls Science Summit that will take place from 7-9 November 2025 at the Falling Walls Science House, Karl-Marx-Allee 34, Berlin. Attendees will have the opportunity to participate in person or attend online.
The Falling Walls Global Call is an international competition designed to bring together a diverse range of science enthusiasts. It seeks the most groundbreaking and innovative science breakthroughs of the year. Nominations and applications from all over the world are invited to help make the 2025 Summit a celebration of excellent science.
Applications in the following categories are welcome:
In the Life Sciences category internationally recognised, established academics and leaders in the scientific study of life and organisms (e.g. biology, neuroscience, zoology) are welcome to apply.
We encourage you to explore the call and be part of this global celebration of science.
27 – 28 May 2025
Institute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 165 02 Prague 6
TBD
14 March 2025, 13:00-18:00
Kamenice 5, CEITEC MU, building E35, Brno
Dear Colleagues and Friends,
we are pleased to invite you to the Open Day at the MAFIL CEITEC Core Facility, which is taking place this year as part of the Brain Awareness Week (Týden Mozku) organized by the Czech Academy of Sciences. The Czech-BioImaging staff and users will be available from 1:00 PM to 6:00 PM to share insights into the projects they are currently working on and to discuss any topics related to their scientific focus.
Týden mozku (Week of the Brain) is a unique cycle of lectures on the newest discoveries and trends in brain research and neuroscience, which is a part of the Brain Awareness Week (BAW), the world’s largest public awareness campaign on the success and benefits of brain research. The Week of the Brain in the Czech Republic was initiated and established by the Czech neuroscientist Professor Josef Syka in 1998.
Leading Czech experts in the field of theoretical and clinical neuroscience give lectures during the week-long event, which usually takes place in March. Admission is free to all the festival events. Due to capacity, registration is necessary. We look forward to seeing you there!
For more information (in Czech only), you can visit the official website: www.tydenmozku.cz.
7-11 April 2025
Online
Dear Czech-BioImaging users,
we would like to inform you about the Image Data Community Days that will be happening from 7-11. April this year, organized by Euro-BioImaging.
This free week-long online event will bring together Euro-BioImaging Node staff, researchers and other experts from around the world to explore and exchange on the latest advances in image data through a mix of workshops, lectures and interactive discussions.
Throughout the week, you will have the opportunity to participate in a variety of sessions, ranging from overview talks to in-depth workshops on key topics such as FAIR data, preclinical and medical image data, image analysis, next-generation file formats and AI.
All events will be hosted on Zoom, with sessions scheduled between 9:00 AM to 4:00 PM CEST each day. Register now to secure your spot for this exciting week of learning, collaboration, and networking in the world of image data.
We are very much looking forward to your participation in the week!
Where: Institute of Entomology, Biology Centre of the Czech Acad. Sci., České Budějovice
Dear Czech-BioImaging users,
are you passionate about microscopy and data analysis? The Laboratory of Microscopy and Histology at the Biological Center of the Academy of Sciences of the Czech Republic is seeking a Scientific Assistant to specialize in the analysis of image data from light microscopes. Join us in advancing scientific research and innovation in the field of microscopy!
If interested, please contact via email to sehadova@yahoo.com
13 – 14 October 2025
+ 20 – 21 October 2025
Imaging Methods Core Facility, BIOCEV, Průmyslová 595, 252 50, Vestec
This course is structured in two parts and applicants may register for either part or both:
Introductory Session (October 13-14): Tailored for absolute beginners in Python programming, with a particular emphasis on image analysis and processing. While the skills learned will have broad applications, the focus will center on essential techniques for working with digital images. Prior knowledge of digital imaging is helpful but not required, as all methods will be clearly demonstrated and explained to build a strong foundation in the basics.
Advanced Session (October 20-21): A continuation of the introductory session, focusing on more complex methods, alternative approaches, and hands-on practice with tools like Napari for advanced visualization and AI tools like Cellpose for segmentation. This session builds on skills from the first part, making it ideal for participants who have completed the beginner session and wish to deepen their expertise.
Applicants may register for either part or both.
Covered topics:
09 – 10 December 2025
Building Da I. IPHYS BIF, Krc Campus, Videnska 1083, Prague
The two-day course consists of lectures and hands-on sessions which will demonstrate basic mechanical testing methods such as atomic force microscopy, indentation test or uniaxial and biaxial tensile test. The tests will be introduced in practical sessions together with their biological and methodological relevance. To relate the mechanical tests to the most significant biomechanical structures such as collagen fibers, elastic fibers or fat, the participants will be taught how to link these mechanical properties and microscopy images. Due to the minimum sample alternations, the images are acquired using label-free techniques, for instance, pSHG, THG or CARS.
